BioExp
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BioExp
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B
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C
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D
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O
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W
A
Ablate (class in BioExp.spatial.ablation)
ablate_filters() (BioExp.spatial.ablation.Ablate method)
apply_modifications_custom() (in module BioExp.helpers.utils)
apply_threshold() (BioExp.spatial.dissection.Dissector method)
B
BioExp (module)
BioExp.concept (module)
BioExp.graphs (module)
BioExp.graphs.concept (module)
BioExp.graphs.delta (module)
BioExp.graphs.significance (module)
BioExp.helpers (module)
BioExp.helpers.losses (module)
BioExp.helpers.metrics (module)
BioExp.helpers.models (module)
BioExp.helpers.pb_file_generation (module)
BioExp.helpers.utils (module)
BioExp.spatial.ablation (module)
BioExp.spatial.dissection (module)
C
categorical_focal_loss() (in module BioExp.helpers.models)
ConceptGraph (class in BioExp.graphs.concept)
CONV2D() (in module BioExp.helpers.models)
conv_block() (in module BioExp.helpers.models)
D
DeltaGraph (class in BioExp.graphs.delta)
dense_block() (in module BioExp.helpers.models)
dense_conv_block() (in module BioExp.helpers.models)
dice() (in module BioExp.helpers.losses)
(in module BioExp.helpers.metrics)
dice_() (in module BioExp.helpers.metrics)
dice_coef() (in module BioExp.helpers.losses)
(in module BioExp.helpers.models)
dice_coef_loss() (in module BioExp.helpers.losses)
(in module BioExp.helpers.models)
dice_coef_rounded_ch0() (in module BioExp.helpers.models)
dice_coef_rounded_ch1() (in module BioExp.helpers.models)
dice_coef_rounded_ch2() (in module BioExp.helpers.models)
dice_coef_rounded_ch3() (in module BioExp.helpers.models)
dice_core_coef() (in module BioExp.helpers.losses)
dice_core_metric() (in module BioExp.helpers.losses)
(in module BioExp.helpers.metrics)
dice_en_coef() (in module BioExp.helpers.losses)
dice_en_metric() (in module BioExp.helpers.losses)
(in module BioExp.helpers.metrics)
dice_label_coef() (in module BioExp.helpers.losses)
dice_label_metric() (in module BioExp.helpers.metrics)
dice_loss() (in module BioExp.helpers.losses)
dice_updated() (in module BioExp.helpers.losses)
(in module BioExp.helpers.metrics)
dice_whole_coef() (in module BioExp.helpers.losses)
dice_whole_metric() (in module BioExp.helpers.losses)
(in module BioExp.helpers.metrics)
Dissector (class in BioExp.spatial.dissection)
G
gen_dice_loss() (in module BioExp.helpers.losses)
generate_fmaps() (BioExp.graphs.concept.ConceptGraph method)
generate_graph() (BioExp.graphs.concept.ConceptGraph method)
(BioExp.graphs.delta.DeltaGraph method)
generate_link() (BioExp.graphs.concept.ConceptGraph method)
generate_pb() (in module BioExp.helpers.pb_file_generation)
get_concepts() (BioExp.graphs.concept.ConceptGraph method)
get_layer_idx() (BioExp.graphs.concept.ConceptGraph method)
(BioExp.graphs.delta.DeltaGraph method)
(BioExp.graphs.significance.SignificanceTester method)
get_link() (BioExp.graphs.delta.DeltaGraph method)
get_threshold_maps() (BioExp.spatial.dissection.Dissector method)
graph_significance() (BioExp.graphs.significance.SignificanceTester method)
L
load_file() (in module BioExp.helpers.utils)
load_images() (in module BioExp.helpers.utils)
load_numpy_slice() (in module BioExp.helpers.utils)
load_vol() (in module BioExp.helpers.utils)
load_vol_brats() (in module BioExp.helpers.utils)
M
metric() (in module BioExp.helpers.metrics)
N
node_significance() (BioExp.graphs.delta.DeltaGraph method)
(BioExp.graphs.significance.SignificanceTester method)
normalize_scheme() (in module BioExp.helpers.utils)
O
one_hot() (in module BioExp.helpers.utils)
P
predict_volume_brats() (in module BioExp.helpers.utils)
Q
quantify_gt_features() (BioExp.spatial.dissection.Dissector method)
S
schedule_steps() (in module BioExp.helpers.models)
significance_test() (BioExp.graphs.delta.DeltaGraph method)
SignificanceTester (class in BioExp.graphs.significance)
soft_dice_loss() (in module BioExp.helpers.losses)
softmax_dice_focal_loss() (in module BioExp.helpers.models)
softmax_dice_loss() (in module BioExp.helpers.models)
T
transition_block() (in module BioExp.helpers.models)
U
UNET() (in module BioExp.helpers.models)
unet_densenet121() (in module BioExp.helpers.models)
unet_densenet121_imagenet() (in module BioExp.helpers.models)
W
weighted_log_loss() (in module BioExp.helpers.losses)
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